Bioinformatics Shared Resource (La Jolla)

Getting Started

Internal SBMRI

  • If you have an iLab account, please login at the top right or use this link https://ilab.sanfordburnham.org/
  • If you do not have an iLab account, please click HERE to request an account. All fields are required.

 

External SBMRI

  • You must have a Customer ID and iLab account to request services from this facility.
  • To obtain a Customer ID please email Eveline Hernandez at ehernandez@sanfordburnham.org
  • To obtain an iLab account, please click HERE.


Forgot your password? Please click HERE.

Overview of Services

 

The Bioinformatics Shared Resource (BSR) is a member of the Cancer Center Shared Resources. Our mission is to provide bioinformatics services to the other Shared Resources and to individual researchers throughout the Institute. Our services span the entire field of bioinformatics from Next-Gen Sequencing Data Analysis, pathway modelling, and microarray analysis to high-throughput screening and data management.


Our services includes (but not limited to):


  • Next-Generation Sequencing Data Analysis: From Reads to Biology (RNA-Seq, ChiP-Seq, DNA-seq, exome sequencing, targeted resequencing, SNP and indel detection and more)   
  • Statistical data analysis, e.g., power analysis and calculation of the optimum number of animals needed for the experiment
  • Systems Biology Support and Pathway Analysis (via GeneGO, IPA and NextBio)
  • Microarray and Proteomics Data Analysis (from raw signals to biology/hypothesis verification)
  • Genome and Gene Family Analysis and Annotation
  • Custom Applications Developments
  • Bioinformatics Classes and Software Training
  • Grant and Paper Preparation Assistance
  • Website and Database Development
  • Laboratory Information Management System - LIMS


Support for the BSR comes from three sources: 


  • Participation in PIs grants
  • Cancer Center Support Grant
  • Chargebacks


    
Pricing Schedule                Hourly rates

SBMRI Cancer Center and                 
La Jolla Neuroscience Center    $35.00    
External Non-Profit                    $47.00    
External Commercial                  $92.05    

 

 

Accounts on IPA (Ingenuity), MetaCore (GeneGo) and NextBio (NextBio)

We have Institute-wide subscription to Systems biology tools IPA, MetaCore and NextBio. To get access to any of those tools please follow instructions at bsrweb.burnham.org



Leadership/Group Members

Alexey M. Eroshkin Ph.D. | BSR Director and Bioinformatics Specialist

eroshkin@sanfordburnham.org

(858) 795-5336

3010 Science Park Dr, San Diego, CA 92121

Room 2406, Building 10

 

Roy Williams Ph.D. | Bioinformatics Specialist

 royw@burnham.org

(858) 646-3100 x3915

Room 2405, Building 10

 

Xiayu (Stacy) Huang Ph.D. | Biostatistion

 xyhuang@sanfordburnham.org

(858) 646-3100 x3916

Room 2405, Building 10

 

Location and hours of operation

Hours Location

Monday - Friday

8:30AM - 5:30PM

Excluding Holidays     

Room 2405, Building 10

La Jolla, California 92121

Links and Resources

  1. www.sanfordburnham.org
  2. Bioinformatics Internal Site
  3. Bioinformatics Public Site

Contacts

Name Role Phone Email Location
Alexey M. Eroshkin Ph.D.
BSR Director and Bioinformatics Specialist
 
(858) 795-5336
 
eroshkin@sanfordburnham.org
 
Room 2406, Building 10